mature_miRNA miRNA* pre-miRNA EST_contig mismatches bulges arm species source_database RFAM_best_hit RFAM_lowest_evalue miRBase_best_hit miRBase_lowest_evalue folding_energy secondary_structure TATTGGTGTCGCTCGACACCA GTGTCGTTCGACACCTACG TGTCGTCAGGTATTGGTGTCGCTCGACACCAGGGGTGGTGTCGTTCGACACCTACGGGGATTT TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGCATAAGAAATCACTGAATAAAACAAGAATAGATTAAGGTTTAGCAGGATTTTCTCTAAAGGGAGTTTCCATAGGGTTTTGCTCCCAAAGTACAAAAGAAAAAAGGAGAATAGCCTCTCCAAGCTTAGGTCTAAACAATGACCTTTAAAACTATATATATGACCTAAAAACGTGATGGGCCTTCTTTAGAAATAAGAGAAACTTCTGGGCCATATATGGAAATCTTCAAAACATCAATAAATTGCGTCTTCGAATTGTCGTCAGGTATTGGTGTCGCTCGACACCAGGGGTGGTGTCGTTCGACACCTACGGGGATTTTGGTCTGCGAACTGCTTCTGCAACTTAAGTTGTCTGTTTTGCTCCAGAATGCTCCATAATCTCCAAATGCATCACAAACATGTAAAGATCTGAAAAAGACTAGAAAAGACTCTAGAAATAACAATTAGACTTTAAAACCTATACCTAAAACATAGTTAAAAGCAGTAAAAATAGGGTTTTATCAACACACATGTGCCATTATTACCTAGTTAGTATTTCCCAATGTTACCATTACTATCCACAATTCACAATTGTAGTATTAGCCACATCCGCCAACACTACCTAGATATCAACTTAGTATTTCCCAATGTTACTAGTACTATCCACAATTCACAATTGTATTATTACTCACATCCGACAATATAACCTAGAAATCAACTTAGTAATTCCCAATGTTACTAGTACTATCCACAAATCAAAATTGTACTATTACTCAATTCAAGCGGTATTACTCGTCATATCCATGACATTTGCCATTGAGATGTCCTCGTGTCTCCTCCCCTCCTCCTCCACGGGTTTTTCCATTGAGACGTCCTCGTCTCTCTCCTCTTCCATTGAGACTTTCTCGTGTCTCTCCTCCTCCACGATAGTAGCGATACAAACGCCCTCTTGTCTCTCCTCGTCCACGGGATAAGCATTTGAGATGTCCACGTTTGCTCCTTTGA 2 2 5' arm Arabidopsis_thaliana mirnest 100 100 -26.3 ....(((..(((..(((((((..((((((((....))))))))..))))))))))...))).. (-26.3)