mature_miRNA miRNA* pre-miRNA EST_contig mismatches bulges arm species source_database RFAM_best_hit RFAM_lowest_evalue miRBase_best_hit miRBase_lowest_evalue folding_energy secondary_structure AGAATTGTGGCTGGACATCTG GATTGTCCAAACGCAATTCTTG ACTCAGGAGCTTCGCCACTGATTGTCCAAACGCAATTCTTGTACGAGTCTGCGGCCAACCGAGAATTGTGGCTGGACATCTGTGGCTGAGCTCTGG 3 1 3' arm Bos_taurus mirbase mir-219 1e-34 bta-mir-219-1 1e-49 -47.4 .....(((((((.(((((.(((.(((((..(((((((((((...(.((.....)))...)))))))))))..)))))))).))))).))))))).. (-47.40)