mature_miRNA miRNA* pre-miRNA EST_contig mismatches bulges arm species source_database RFAM_best_hit RFAM_lowest_evalue miRBase_best_hit miRBase_lowest_evalue folding_energy secondary_structure CCTCTTCCTCTTCCTCTTCCT GAAGAAGAAGAGTGAAGAGTGAA GGACAGAAGAAGAAGAAGAGTGAAGAGTGAAGCTCCTCCTCTCGAACAACAACAATGGCGACAATGGCTGCAATCGGATCCTTAAAAGTCCCTTCCTCTTCCTCTTCCTCTTCCTCGAACCACA GGACAGAAGAAGAAGAAGAGTGAAGAGTGAAGCTCCTCCTCTCGAACAACAACAATGGCGACAATGGCTGCAATCGGATCCTTAAAAGTCCCTTCCTCTTCCTCTTCCTCTTCCTCGAACCACACCCGTAGATTATCATCTTCTTCTCAACGGAAGACTCTCTCGTTCTCGTCGTCTTCTCTTACCGGAGAGAAACTCAACCCCACGCAGGAGATCATCATCTCGAATCTCCCACGTGGCAACGAGAGAAGAACGCCATCGATCGTCTCTCCAAAAGCAGTTTCCGATTCGCAAAACTCGCAAACTTGCCTTGATCCTGACGCTAGCAGAAGTGTGTTGGGGATAATTCTGGGAGGTGGTGCTGGAACGAGATTGTATCCGCTAACGAAGAAGAGAGCGAAGCCAGCTGTTCCTCTCGGCGCCAACTACCGTCTCATTGATATCCCAGTGAGCAATTGCTTGAACAGTAACATCTCCAAGATCTATGTCCTTACTCAGTTCAACTCCGCTTCTCTCAACCGCCATCTCTCCCGAGCTTACGCCAGCAACATGGGTGGTTACAAGAACGAAGGCTTCGTCGAGGTTCTTGCTGCTCAACAGAGTCCCGAGAATCCCAATTGGTTTCAGGGGACTGCTGATGCAGTGAGGCAGTACTTGTGGCTGTTTGAAGAGCACAATGTGTTGGAGTTTTTGGTTCTTGCAGGGGGATCATTTTGTACCGTATGGACTACGAG 2 2 3' arm Brassica_rapa mirnest 7SK 7.0E-6 mtr-MIR2673b 6.0E-6 -31.8 ((...((.(((((.((((((.((((((.(((((.((.....(((..((.......)).)))....))..))....((((........)))).))))))))))))))).))))).))...))... (-31.8)