mature_miRNA miRNA* pre-miRNA EST_contig mismatches bulges arm species source_database RFAM_best_hit RFAM_lowest_evalue miRBase_best_hit miRBase_lowest_evalue folding_energy secondary_structure AGCTACATTGTCTGCTGGGTTT CCTGGCATACAATGTAGATTTCTGT CCAACATCCAGGTCTAGGGCATGAACCTGGCATACAATGTAGATTTCTGTGTTTGTTGAGCAACAGCTACATTGTCTGCTGGGTTTCAGGCTACCTGGAAACACGTTCTT 3 5 3' arm Bos_taurus mirbase mir-221 3e-29 eca-mir-221 9e-48 -44.2 ......(((((((....(((.((((((..(((.(((((((((....((((((((...)))).))))))))))))).)))..)).)))).))))))))))........... (-44.20)