mature_miRNA miRNA* pre-miRNA EST_contig mismatches bulges arm species source_database RFAM_best_hit RFAM_lowest_evalue miRBase_best_hit miRBase_lowest_evalue folding_energy secondary_structure GCAAAGCACACGGCCTGCAGAGA TCTGGGCCTGTGTCTTAGGCTC CTTCGGCGATCACTGCCTCTCTGGGCCTGTGTCTTAGGCTCTGCAAGATCAACCGAGCAAAGCACACGGCCTGCAGAGAGGCAGCGCTCAGCTC 1 5 3' arm Bos_taurus mirbase mir-330 3e-35 cfa-mir-330 4e-43 -44.42 ....(((((.(.(((((((((((((((((((.(((..((((.............)))).))))))).))))..))))))))))).).)).))). (-44.42)