mature_miRNA miRNA* pre-miRNA EST_contig mismatches bulges arm species source_database RFAM_best_hit RFAM_lowest_evalue miRBase_best_hit miRBase_lowest_evalue folding_energy secondary_structure ACTCGACCACGAGGTCGAGCG ACTCGACCCCCAGGTCGAGTAG CAAGAAGACCACTCGACCCCCAGGTCGAGTAGAAGACATCACAACTTCACCTCACCACTCGACCACGAGGTCGAGCGTCTTCAT CAAGAAGACCACTCGACCCCCAGGTCGAGTAGAAGACATCACAACTTCACCTCACCACTCGACCACGAGGTCGAGCGTCTTCATCTCCATCACCTGACCATCACTCGATCGCATCACTCGACCACGAGGTCGAGTGTCTTCACCTTCATTGCCAGACCACTACACGACCTCATCACTGTACCTGGAAGTCGAGTATCACCATCACCACCACTCGACTGCATAGTTACTACCTGGCAACAGACTGTGCAGTCGAGTATCGATGTTATACTTTCTATCTGTTACTCGACCTATCACTCAAATACCATAGTTATTGAAAATAAAACTTCAAGTTCTTCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 5 0 3' arm Arabidopsis_thaliana mirnest MIR854 0.0000003 100 -29.6 ...((((((..(((((((....((((((((.((((.........))))........))))))))....))))))).)))))).. (-29.6)