mature_miRNA miRNA* pre-miRNA EST_contig mismatches bulges arm species source_database RFAM_best_hit RFAM_lowest_evalue miRBase_best_hit miRBase_lowest_evalue folding_energy secondary_structure AGAGATGAAGATTTGGATTGG AATCGCGTTCTCCGTCTTCTT GGAGGAAGCTCATCAGGAATCTAATCGCGTTCTCCGTCTTCTTTGAGGTGATTGCAGTGAGCTATGCGATTATGACGACTAGAGATGAAGATTTGGATTGGAAGCTGAGGAGTTTCAGGA GAAAGAAGGGGAAGAAGAAACCCTTTGGCTGAGAACGAAGCATCGCGTTTCTTCGATTCCCAATTTCGGTTTTGCGAGAAACCCAATTCTCTCTAGTGGAGATCGATGGCGTCGGTGGAGAAGGATCACGAAGGCACCGTGGCTGATACCGGAGATCAGAATGATTCCGCCGCCGTACCCTCGGAGACTGTCGGCGGAGGGGAGAAGAAGACGACGACGACGAAGGGTAAGGGTATGTTCTCGCGAATCTGGAACTGGATATTTAGGGTTAAAGGAGACGACTTCGAGAAGAGGCTGAAAGGGATATCGAAGGAGGAAGCCACGATCAGATCCAGGATGAAGCGAAGATCGGTCACGAGGAGGAAGCTCATCAGGAATCTAATCGCGTTCTCCGTCTTCTTTGAGGTGATTGCAGTGAGCTATGCGATTATGACGACTAGAGATGAAGATTTGGATTGGAAGCTGAGGAGTTTCAGGATCTTGCCTATGTTTCTTTTGCCTGCTCTTTCTTTCCTTACCTATTCTTCTCTCGTTAGCTTCACCAGGATGTGTGACCGCAGAGATCAGATCACATTGGAGAAGCTTCAAGGTGAAATGCTGGGGAAGATCGATGAGTTG 3 2 3' arm Brassica_rapa mirnest 100 100 -36.3 ....(((((((.((((...(((((((.((.(((.((((((..(((..(((((((((........)))))))))..)))...)))))).)))..)))))))))..)))).))))))).... (-36.3)