mature_miRNA miRNA* pre-miRNA EST_contig mismatches bulges arm species source_database RFAM_best_hit RFAM_lowest_evalue miRBase_best_hit miRBase_lowest_evalue folding_energy secondary_structure TGCACTGCCTCTTCCCTGGCT ACAGGGAACAAGCAGAGCATG ATGAGAGAGAGACAGGGAACAAGCAGAGCATGGATTGAGTTTACTAAAACATTAAACGACTCTGTTTTGTCTCTACCCATGCACTGCCTCTTCCCTGGCTCCCTCTTT CAAAGGTTAGATTGGTATTGCAATGAAAGAAGACAAAGCGGTAATGAGAGAGAGACAGGGAACAAGCAGAGCATGGATTGAGTTTACTAAAACATTAAACGACTCTGTTTTGTCTCTACCCATGCACTGCCTCTTCCCTGGCTCCCTCTTTTTTTCTCTATATTTCTCTCTCTCCTTTCATTTCACAGCTTTCAATGGAATTTTATTGCTACTGCTAACGTTTGTGACAGCTGACGACAAGCTTAAGGGTTTTGGGGTTTGGTCTACCTCTCTGTCATTCATGAAGTGGAGCTGAAAGAAGCAATGGGGTCCATTTCTTGGCGCAAGAGAAGGGCATCAATGAAAATGTCCAGATTCTCTCCCTGCATCATATCCTCAATGGCATGGTGAGTGATTCCCACACGGTGATCCGTTACTCGCCCTTGTGGAAAATTGTATG 5 0 3' arm Arabidopsis_thaliana mirnest MIR408 4e-53 ath-MIR408 1e-56 -38.5 ..(((((.(((.(((((((...((((.((((((...(((.....(((((((...........))))))).)))...)))))).))))...))))))).))).))))). (-38.5)