mature_miRNA miRNA* pre-miRNA EST_contig mismatches bulges arm species source_database RFAM_best_hit RFAM_lowest_evalue miRBase_best_hit miRBase_lowest_evalue folding_energy secondary_structure AGTGGTGTCGATCGATACCAT GGTGTCGATCGACACTCTGGT TGCCACCTGAGAGTGGTGTCGATCGATACCATGATGGTGTCGATCGACACTCTGGTCATTTCAC TTTTTTTTTTTTTTTTTTTTTTGACAAAAGTTTTGACTCAATAAAATGATTATCTAAGTTAAAATGACACAACTGACTCATAAGAAAAGAAAAGATGAAGTTAGTAACTGACTCCCCCAGACTTAGGTAACATTGTCCCCAGAGTTATTAAGCTAGAGGAATCGAAAGAGAAATAGTCAAAAGTTAAAAAGTCAGTAAATGTGAGTTGCCACCTGAGAGTGGTGTCGATCGATACCATGATGGTGTCGATCGACACTCTGGTCATTTCACATTGCTTTGTGAATTCTGCTCATTGTTGTAGAGCCTTGGTTAGTGTTTTCACATGGATCCTCCAGTTAGACTGTTAAATCACTAAAACACACATCAATAGTTCCAACAAAGCATAAGAAAATAAGTGCAACAAGTTTTAAAACAAATAACCAATAGTCTGAAATAAAGCAGAAACAAAGTTAGAAAATAAAACACGATAAGGAGGGTGGCTAGTCCTCATGCTCTGAGCCGGAGGTGGGTGTGGGAGAGCGACGACGACGACGACTGGGGGCAACACGACCGCAGCGAGAAAGTGTAGCTATGGCGTTCCAGACGGTCTTGAAGCTGTCAACGACGTACTGCTGAAAGACCTGTGGCTCCATCGGGATGGGTGGAGGAACCAAGTGATGAGCGAACACAGCACCAAAGTTGACATTACGGTCAACTTGCTCAAATCCAAGGCTTTCAGGAAAGAAGTCATGAAGAGCGTGATAGAGCAGTAACAACTCAGAGAGTCTCATCTTGCCAGGCTTCATCTTGCACAACAGTGTGCTACTAATCAGCCTAACCAAATACCGTAGAACAGGGTGGCGGATCTCTGAGTGAACTGCGTCCAGGCA 4 0 5' arm Arabidopsis_thaliana mirnest 100 ath-MIR855 0.000003 -28.4 .......(((((..(((((((((((((((((...))))))))))))))))).......))))). (-28.4)