mature_miRNA miRNA* pre-miRNA EST_contig mismatches bulges arm species source_database RFAM_best_hit RFAM_lowest_evalue miRBase_best_hit miRBase_lowest_evalue folding_energy secondary_structure AGCCCTGGCCCTGCCATCGTG ACGAGGGCTCGGGACACAGCCCTGCTTC CGCAACGAGGGCTCGGGACACAGCCCTGCTTCCTGGCCCACGTCACCCGTCGTGGCCAGAGCCCTGGCCCTGCCATCGTGTC 4 7 3' arm Bos_taurus mirbase 100 100 -34.5 .(((.(((.(((..(((...(((....(((..((((((.(((.(....).)))))))))))).))).))).))).)))))). (-34.50)