mature_miRNA miRNA* pre-miRNA EST_contig mismatches bulges arm species source_database RFAM_best_hit RFAM_lowest_evalue miRBase_best_hit miRBase_lowest_evalue folding_energy secondary_structure GAATCCACCACGAACAACTTC TGTTGTCCGTGAATGATTCGT TTTGGTACTGAAAAAAGTGTTGTCCGTGAATGATTCGTCATAAGTAAAGCGAATCCACCACGAACAACTTCTCTTCAAGTACCACA 7 0 3' arm Bos_taurus mirbase mir-154 7e-39 oar-mir-382 1e-43 -28.3 ..((((((((((......(((((.((((...(((((((..........)))))))...)))).))))).....))).))))))).. (-28.30)