mature_miRNA miRNA* pre-miRNA EST_contig mismatches bulges arm species source_database RFAM_best_hit RFAM_lowest_evalue miRBase_best_hit miRBase_lowest_evalue folding_energy secondary_structure TCATCATCATCATCATCGTAT TAGATGGTGGTGAGGATGAGA AGTTCTTCTACATATATTAGATGGTGGTGAGGATGAGACTAGGAAAGATTGTGGAAGGCTTGAAGTCGAAGATAAAGACTGGTCTAAGGATGCGGAAGAGATCATCATTATCATCATCATCATATTCATCTTCATCATCATCGTCATCATCATCATCATCATCGTATGAGAAGATAGAGAAGAGC GCGGGGACAGATTAACTATTTACATGTAAAAAAAAATGATTTGTCTCTTAACTTTTTTGTTGGGATATACTGTATTCTTGAATTAAGTTGTTGAGATAATGTTTATCTCCGACTCCAAAGTGGGATCTAATTAGTTTTCTTCTTCTTCAGTTCTTCTACATATATTAGATGGTGGTGAGGATGAGACTAGGAAAGATTGTGGAAGGCTTGAAGTCGAAGATAAAGACTGGTCTAAGGATGCGGAAGAGATCATCATTATCATCATCATCATATTCATCTTCATCATCATCGTCATCATCATCATCATCATCGTATGAGAAGATAGAGAAGAGCGAGAGTATGAGATTTGAGTTGAGAAGCAAAAAGGCTCACAAAATTATCCAAGAAACCCTTCAAATTGCTGACTCTCCCACA 5 0 3' arm Arabidopsis_thaliana mirnest 100 ath-MIR414 0.0001 -46.8 .((((((((...(((.((.(((((((((((.(((((......((..(((((..(((((..((((...((.(((((.((.((((((.............)))))))).))))).)).........)))))))))..))..))).)).))))).))))))))))).......)).))).)))))))) (-46.8)