mature_miRNA miRNA* pre-miRNA EST_contig mismatches bulges arm species source_database RFAM_best_hit RFAM_lowest_evalue miRBase_best_hit miRBase_lowest_evalue folding_energy secondary_structure CTGACAGAAGAGAGTAAGCAA GTTTCACCGTCTTTAGTCAGTT ATTACAAGGAGCTTAAAGAGACTGACAGAAGAGAGTAAGCAAAGCCTGTTTCATTAACCTTCAAACCGGGATCTCACACGTTTCACCGTCTTTAGTCAGTTGTGCTTTTCCGCCTTCTC GACAAGTTTAAAGAGTTATTACACATAATTTCTTCAAGCATTTACTAAGTCTCAATGCATTTATTTAACCATGTCGTAGGTTTAGCAGATAGCTTTGATTACAGGTAATATGGAGAAACAGACAGAGACACAGAGGATTACAAGGAGCTTAAAGAGACTGACAGAAGAGAGTAAGCAAAGCCTGTTTCATTAACCTTCAAACCGGGATCTCACACGTTTCACCGTCTTTAGTCAGTTGTGCTTTTCCGCCTTCTCTCGTTGTGTCCAGCTAAGCGTCTCCTGCAACTCCGCTTGGCTTCATCAAACTCACTGAGCGCGTGAAACCTGCTGCATTGTTGGCAGAAACGTTGGTGAAGACCAGAGATCCGAACATGAGGAGCTTTGGCATGAAACTG 5 1 5' arm Arabidopsis_thaliana mirnest 100 vvi-MIR156d 0.00009 -21.3 .....((((.....((((.(((((((.(((((..((((((....((((.((............)).)))).........)))).))..))))).)))))))...))))....))))... (-21.3)