mature_miRNA miRNA* pre-miRNA EST_contig mismatches bulges arm species source_database RFAM_best_hit RFAM_lowest_evalue miRBase_best_hit miRBase_lowest_evalue folding_energy secondary_structure TCCCTGAGACCCTAACTCGTGA ACGGGTCAGGAGCTTGGGAGAC GCTCTCCTCCTGTTCCCTGAGACCCTAACTCGTGAGGTCTTTTTCCAAAATCACGGGTCAGGAGCTTGGGAGACAGGTGGAGGGC 7 0 5' arm Danio_rerio mirbase lin-4 6e-33 dre-mir-125b-3 0.0000003 -48.3 (((((((.(((((..((..((..(((.((((((((((.......))....)))))))).)))..))..))..))))).))))))) (-48.30)