mature_miRNA miRNA* pre-miRNA EST_contig mismatches bulges arm species source_database RFAM_best_hit RFAM_lowest_evalue miRBase_best_hit miRBase_lowest_evalue folding_energy secondary_structure TATGGCTTTCTATTCCTATGTG CATAGGGTTCAAAGCCATTGG TGCTGTGTTTTATGGCTTTCTATTCCTATGTGATTTTCTTCTGCCGTGTCACATAGGGTTCAAAGCCATTGGGTACAGAG 4 1 5' arm Danio_rerio mirbase mir-135 6e-39 dre-mir-135c-2 4e-40 -32.02 ..(((((..(.((((((((....(((((((((((.............)))))))))))...)))))))).)..))))).. (-32.02)