mature_miRNA miRNA* pre-miRNA EST_contig mismatches bulges arm species source_database RFAM_best_hit RFAM_lowest_evalue miRBase_best_hit miRBase_lowest_evalue folding_energy secondary_structure TGCCAAAGGAGATTTGCCCAG GGGCAAGTTCTCCATTGGCAGG AGCTGCATTACAGGGCAAGTTCTCCATTGGCAGGTAGCCACTATGATATGCATCTCATAAATATTTGCAACTTTCTTAATGTGCAATCTGCCAAAGGAGATTTGCCCAGCGATTCTCC GAAACAAAGTTACGTTTTCCCTTTTCACTTTTGTTGCCGGTTAGCACTTCAATGTAAAAATTAATTCACCATAAAGGATGGTTCGCATACAAAAGAATAAAACCTTATGAAAGGACACATGCAACGCAAAATAAAGGCATCGTTCCATAGGATATGCCGATCCTAGTGAGCCATAAATAACGTTCCCAAAGGCATTCCTCTATGTGTGTGGATCTTCCCAGTTGCAGCTGCATTACAGGGCAAGTTCTCCATTGGCAGGTAGCCACTATGATATGCATCTCATAAATATTTGCAACTTTCTTAATGTGCAATCTGCCAAAGGAGATTTGCCCAGCGATTCTCCTGCAACATCTGCTTCATGAAAACAGTATTCGTTAGTTTCTTCAATCATTCATTAGAAACATTTCTTGTACTGGTTGAAATGTTGCATCTCGAACCATTCATATGCCATATTTCCCTTGTTTTGTATTTTGGTAAAAACCATTTTTCCCAGCTTCTTTTTCGGTGAAGTCGATATTTATAATTTTATAATTTATTTTACATTTTGGTTAGTATAGACCAGCAGGTGAATAACCCATAAGCCATGCGATTAGTAAAGTGACATAAGATCCCATTGTATTAAAATGTGGGGAAATAATTTATTTAGTGAAAAAACTGGTATTTAATTTATTCCAAAAAAAAAAAAAAAAAAA 3 1 3' arm Glycine_max mirnest mir-399 0.0000000000005 mtr-MIR399a 7e-18 -38.8 ............((((((((.((((.(((((((((.((((.((.((..((((.............))))....)).)).)).)).))))))))).))))))))))))........... (-38.8)