mature_miRNA miRNA* pre-miRNA EST_contig mismatches bulges arm species source_database RFAM_best_hit RFAM_lowest_evalue miRBase_best_hit miRBase_lowest_evalue folding_energy secondary_structure TAAGGCACGCGGTGAATGCCA GTGTTCACTGTGATCCTTGAT CTTCTTATCCATCCCGTTCTTAGTGTTCACTGTGATCCTTGATTTATATTCTAAAACAATTAAGGCACGCGGTGAATGCCAAGGCTCGAGGGTGAAATTTC 3 0 3' arm Strongylocentrotus_purpuratus mirbase mir-124 1e-40 dre-mir-124-4 0.0000000003 -33.52 .........(((((((.((((.((((((((((((..((((((((.............))))))))..)))))))))))).))))..)).)))))....... (-33.52)