mature_miRNA miRNA* pre-miRNA EST_contig mismatches bulges arm species source_database RFAM_best_hit RFAM_lowest_evalue miRBase_best_hit miRBase_lowest_evalue folding_energy secondary_structure TTTGGTCCCCTTCAACCAGCCGT AGCTGGTAAACGGGAACCAAATC TCCGGAAAATGTAGCGCTTTAGCTGGTAAACGGGAACCAAATCGTGAAGTAAATGCGGATTTGGTCCCCTTCAACCAGCCGTAGCACTGCATTCTAGACAA 8 0 3' arm Strongylocentrotus_purpuratus mirbase mir-133 4e-44 bfl-mir-133 0.00000002 -39.1 ((..((..((((((.(((...((((((....(((.((((((((((.........)).)))))))).)))....))))))...))).))))))))..))... (-39.10)