mature_miRNA miRNA* pre-miRNA EST_contig mismatches bulges arm species source_database RFAM_best_hit RFAM_lowest_evalue miRBase_best_hit miRBase_lowest_evalue folding_energy secondary_structure TTCGTTGTCAACGAAACCTGC GGGTTTCGCTGATATCGCACA TATTATCCACGGGTTTCGCTGATATCGCACAGTTCTTTTAATGTCTCTGTTCGTTGTCAACGAAACCTGCGGTTATTG 4 0 3' arm Strongylocentrotus_purpuratus mirbase 100 ame-mir-981 0.00001 -27.7 ......((.(((((((((.(((((.((.((((..(.......)...)))).)).))))).))))))))).))...... (-27.70)