mature_miRNA miRNA* pre-miRNA EST_contig mismatches bulges arm species source_database RFAM_best_hit RFAM_lowest_evalue miRBase_best_hit miRBase_lowest_evalue folding_energy secondary_structure TGGGTTGAGGCTTTTGGGCAGGA GCGTCCAACCGTAACCTAAG ATTAGTACTTTTGGGTTGAGGCTTTTGGGCAGGAGCGGCAGCGTCCAACCGTAACCTAAGTGACTTTG 5 3 5' arm Strongylocentrotus_purpuratus mirbase 100 spu-mir-4848b 0.00000001 -19.4 ...(((...(((((((((.((...((((((....((....)))))))))).)))))))))..)))... (-19.40)