mature_miRNA miRNA* pre-miRNA EST_contig mismatches bulges arm species source_database RFAM_best_hit RFAM_lowest_evalue miRBase_best_hit miRBase_lowest_evalue folding_energy secondary_structure TGGACGGAGAACTGATAAGGGC CCTTATCATTCCCGCGTCCAGC TAGAAGATGACGTTTTCCTCAACTCCTTATCATTCCCGCGTCCAGCCCGACATGGGAAGCTGGACGGAGAACTGATAAGGGCTTGTGGTTTACACTAATCA 3 2 3' arm Saccoglossus_kowalevskii mirbase mir-184 0.000000001 isc-mir-184 0.00000000008 -38.1 .....(((...((...((.(((..(((((((((((.(.((((((((((......))..))))))))).))).))))))))..))).))...))....))). (-38.10)