mature_miRNA miRNA* pre-miRNA EST_contig mismatches bulges arm species source_database RFAM_best_hit RFAM_lowest_evalue miRBase_best_hit miRBase_lowest_evalue folding_energy secondary_structure TTTTGTTTTGTTTTTTGTTTG AAACTGAATCGCAACAAATCA TGACTACAAACCAAACTGAATCGCAACAAATCAAATTAAATTTTTTTGTTTTGTTTTTTGTTTGTTTGTTTTT CTCGAGTTTTTTTTTTTTTTTTTTTGAACGTTTCACAGTATGTAATTGCAAATCAATTTTTCATCTATCGACCTCTAAATCCCATTTGCAACAATAATAATAATCCCTTTCTTTAAGTATCAATAGATTAAGCCCAGCATAGTTGCTTCACTAATTGAGGTGACTACAAACCAAACTGAATCGCAACAAATCAAATTAAATTTTTTTGTTTTGTTTTTTGTTTGTTTGTTTTTTTTGTGAAAGGGGAAATTAAAACCGGAGAACCCGGGGACTTAAGAACCTCTCAGATGAGAGTAGAGAACCAACAAACTCAGCCCACGTATGACGGCGGGCCACATGGATGGAAGGGAGTGATCTTACCACTGCGCCAGCCCTGCTCTTGTCAGAACGGAAAAGAGCAGCCAAAAGATGGGAAAATGTATGAAGATCAAAAGTAAACGATTACACCCTTTTTGCTTCGCTTTACCCTTTAAATTTGAAACAAGAAATGCTACGTTCGTAGATAAATTCGAAAGGTAGCAGCACGACTGAAAGGCATTCTACTAAAAACATCAGACAATTGCATATGACTGTGCTTTCTGTAGGTATTACTCAACTTAATTTGTGGTATAGTTCCTC 4 2 3' arm Acropora_millepora mirnest 100 100 -13.4 .....((((((.((((.(((.((.((((((..((((...)))).)))))).))..))).)))))))))).... (-13.4)