mature_miRNA miRNA* pre-miRNA EST_contig mismatches bulges arm species source_database RFAM_best_hit RFAM_lowest_evalue miRBase_best_hit miRBase_lowest_evalue folding_energy secondary_structure TCTTTGGTTATCTAGCTGTATGA ATAAAGCTAGGTTACCAAAGTTA TCGTCATGGCGCTGCTTTTTTCTTTGGTTATCTAGCTGTATGAGTGTTAGAAGACGTCATAAAGCTAGGTTACCAAAGTTAAGAACTGCCCCTCTTCATCG 3 0 5' arm Daphnia_pulex mirbase mir-9 0.0000000000004 dpu-mir-79 2e-51 -34.6 .......((.((.(.((((..(((((((.((((((((.(((((.((((....))))))))).)))))))).)))))))..)))).).)).))......... (-34.60)