mature_miRNA miRNA* pre-miRNA EST_contig mismatches bulges arm species source_database RFAM_best_hit RFAM_lowest_evalue miRBase_best_hit miRBase_lowest_evalue folding_energy secondary_structure AGGCAAGATGTCGGCATAGCTGA AGCTGTGTTACATCGTGCCAAC GAATGGAGGGTTTCGCGCGAAGGCAAGATGTCGGCATAGCTGACGTGCTAATCCGAGTGTAGCTGTGTTACATCGTGCCAACGTGAACCGCTCCCAATGAC 3 1 5' arm Daphnia_pulex mirbase mir-31 0.000001 ame-mir-31a 0.00000008 -41.6 ....((((((((...((((..((((.(((((.((((((((((....(((......))).))))))))))))))).))))..)))))))).))))....... (-41.60)