mature_miRNA miRNA* pre-miRNA EST_contig mismatches bulges arm species source_database RFAM_best_hit RFAM_lowest_evalue miRBase_best_hit miRBase_lowest_evalue folding_energy secondary_structure TGATTGTCCAAACGCAATTCTT GAAATGTGTAGGGGCATCGTT TTCTAAAACGTTGCAGGCCCTGATTGTCCAAACGCAATTCTTGTACAAATATAATATCAAGAAATGTGTAGGGGCATCGTTGCTTGCACGTATAAATCATC 3 1 5' arm Daphnia_pulex mirbase mir-219 0.00000002 tca-mir-219 0.00000000008 -34.44 .......((((.((((((..((((.((((..(((((.((((((..............)))))).)))))..))))))))..)))))))))).......... (-34.44)