mature_miRNA miRNA* pre-miRNA EST_contig mismatches bulges arm species source_database RFAM_best_hit RFAM_lowest_evalue miRBase_best_hit miRBase_lowest_evalue folding_energy secondary_structure TGACTAGATCCACACTCATCCA TCTGGTCCATGTTAACTTGATTTGGCGACCGAACTGAAAATTGTTGGTTGATAATTTCATGACTAGATCCACACTCATCCAGTGACACAGTTGGTAATTCG 9 79 3' arm Daphnia_pulex mirbase mir-279 0.000005 cte-mir-279 0.00000008 -19.8 (((((((.(((.......((((...(((((.(((........))))))))..)))).))))))))))....((((.....))))................. (-19.80)