mature_miRNA miRNA* pre-miRNA EST_contig mismatches bulges arm species source_database RFAM_best_hit RFAM_lowest_evalue miRBase_best_hit miRBase_lowest_evalue folding_energy secondary_structure TAGCACCATTGGAATTCAGTTT ACTGAATTCTTTTGATGCCTAGA ACAGAGGAGCTGGGATCACTGAATTCTTTTGATGCCTAGATGTAGTTTGTGACTAGAACTCTAGCACCATTGGAATTCAGTTTACCCTGGCTGGCGCAATT 5 1 3' arm Daphnia_pulex mirbase 100 isc-mir-285 0.0003 -33.5 .......(((..((...((((((((((..((.(((.(((((.(((((...))))).)..))))))).))..))))))))))....))..)))......... (-33.50)