mature_miRNA miRNA* pre-miRNA EST_contig mismatches bulges arm species source_database RFAM_best_hit RFAM_lowest_evalue miRBase_best_hit miRBase_lowest_evalue folding_energy secondary_structure GAAGCTCGTTTCTACAGGTATCT ATACCCTGTAGCTCCGGGCTTTTG CAAAGCCTGCCAGTACCGATACCCTGTAGCTCCGGGCTTTTGTTTGGTTTCTAATAATCAGAAGCTCGTTTCTACAGGTATCTTACGGGTAAACGAAAGAA 4 1 3' arm Daphnia_pulex mirbase 100 ame-mir-993 0.000000001 -35.4 .......((((.(((..((((((.(((((...((((((((((.(((........))).))))))))))...))))))))))).))).))))..(....).. (-35.40)