mature_miRNA miRNA* pre-miRNA EST_contig mismatches bulges arm species source_database RFAM_best_hit RFAM_lowest_evalue miRBase_best_hit miRBase_lowest_evalue folding_energy secondary_structure CAGAGAGCAGAAACAGAACTG GGTTGTGATTGTAATTTGTA CTGAAAACAGGTTGTGATTGTAATTTGTAAAGAAACATGCTGAAGTCCATAGTGGGTTGCTGCAAGGTGTACATATCAGAGAGCAGAAACAGAACTGCCATTTGGA CTGAAAACAGGTTGTGATTGTAATTTGTAAAGAAACATGCTGAAGTCCATAGTGGGTTGCTGCAAGGTGTACATATCAGAGAGCAGAAACAGAACTGCCATTTGGAAATC 5 1 3' arm Glycine_max mirnest 100 100 -19.6 .......(((.((((..((((..((((.......((.(((...((((((...))))))...)))..))........))))..))))..))))..)))((....)). (-19.6)