mature_miRNA miRNA* pre-miRNA EST_contig mismatches bulges arm species source_database RFAM_best_hit RFAM_lowest_evalue miRBase_best_hit miRBase_lowest_evalue folding_energy secondary_structure TGACTAGATCCACACTCATTAA GATGGGTGTGAATCTAGTGTTTCACA ACATCCCAACGGTTGTCGATGGGTGTGAATCTAGTGTTTCACATGATTTTCGATAGCCTGTGACTAGATCCACACTCATTAACAAAAGTTGCCGG 3 4 3' arm Aedes_aegypti mirbase mir-279 1e-46 cqu-mir-279 8e-17 -33.4 ......((((..((((..(((((((((.((((((....(((((.(...........).))))))))))).)))))))))..))))..)))).... (-33.40)