mature_miRNA miRNA* pre-miRNA EST_contig mismatches bulges arm species source_database RFAM_best_hit RFAM_lowest_evalue miRBase_best_hit miRBase_lowest_evalue folding_energy secondary_structure TCACTGGGCAAAGTTTGTCGC GACTAACTTCGTTCAGTTTGGTG TCCACCGAATGTTATGCGACTAACTTCGTTCAGTTTGGTGTCATACGAAGGTTTCCAGTTTCATCACTGGGCAAAGTTTGTCGCATAAATG 2 2 3' arm Aedes_aegypti mirbase mir-3 0.000001 aae-mir-309a-1 1e-46 -28.92 ...........(((((((((.(((((.(((((((..((((....((....)).........))))))))))).))))).)))))))))... (-28.92)