mature_miRNA miRNA* pre-miRNA EST_contig mismatches bulges arm species source_database RFAM_best_hit RFAM_lowest_evalue miRBase_best_hit miRBase_lowest_evalue folding_energy secondary_structure GGAAGAGGCAGTGCAGGGGCT CTTCTGGCTGCTTCACTCTCA GGCTCTGGGAAGAGGCAGTGCAGGGGCTCTACTACTTAGCTTCTGGCTGCTTCACTCTCAAATG GGCTCTGGGAAGAGGCAGTGCAGGGGCTCTACTACTTAGCTTCTGGCTGCTTCACTCTCAAATGGCTCGTGCTGCCACCTACACAGGTGGAGATTCTGGGGGTTGGACCTTTAACACTGTTGCCTGGCCCAAAGGAAAGCTCTATCAGGCTGGTGACACACTTGCTTTCAACTATAACCCTGGGACACACAATGTGGTGGCCGTGAACATGGCTGGATATTATATCTGCAAGACTCCAAGAGGAGCCTAAGTGTATATGTCATGGACGGATCACATCATACTTGTCAATGGACAGAACTACTTCATCTGCAATTATGTTGGTCACTGCGAGTCTGGGATGAATATTTCCATCAACGCT 1 2 5' arm Glycine_max mirnest 100 zma-MIR408b 0.0002 -24.2 .....(((((.((((((((.((((((((.........))))))))))))))))..))))).... (-24.2)