mature_miRNA miRNA* pre-miRNA EST_contig mismatches bulges arm species source_database RFAM_best_hit RFAM_lowest_evalue miRBase_best_hit miRBase_lowest_evalue folding_energy secondary_structure CTCTCCCCTCTCTCTTCTTTT AAGGAGAGAGAGAGAGAGAGAA ACAAAGAACAAGAAGGAGAGAGAGAGAGAGAGAATGCAACGGGAGAAACAAAAAACAGAAGTATTTCTGTGATTGATTCTCTGCAACCGAATCATCATCAGCCACTTCTTCTCCCAGTTTCAGCTCTCCCCTCTCTCTTCTTTTCCTCGGCTC GCAATCGCTGGCCCTATCTCTCACACACCCAAACCCAACATTATTAATACTCTTCCTTCTCTTTACCTTTTACTTTTCGAAGCAAAAACACCATAACAAAACACCCAGAATTTGTGGGTTCCATTCCCAAAACAAAGAACAAGAAGGAGAGAGAGAGAGAGAGAATGCAACGGGAGAAACAAAAAACAGAAGTATTTCTGTGATTGATTCTCTGCAACCGAATCATCATCAGCCACTTCTTCTCCCAGTTTCAGCTCTCCCCTCTCTCTTCTTTTCCTCGGCTCTGGTTCGGTAAGGCGTAGGGGGTTGTTATTATTCTTCATAATGGTTGCAACAGCTGCTACGGCGTCGTTTCTCCCTGTGCCTTCGCCGGACGCTGGAAAAGGGAAACCCAAGGGTGGTGGTGGCGGCGGCGTTTCTGTGAACCTCGGAGGACTCAAAGAGAAGCAAGGTTTGTGCG 2 1 3' arm Glycine_max mirnest 100 100 -46.8 .....((...((((((((((((((...(((((..((.(((((((((..........((((((....(((((((.(((((.........))))))))).)))..)))))))))))).))).)).)))))..))))))))))))))..))..... (-46.8)