mature_miRNA miRNA* pre-miRNA EST_contig mismatches bulges arm species source_database RFAM_best_hit RFAM_lowest_evalue miRBase_best_hit miRBase_lowest_evalue folding_energy secondary_structure TGAGCAAACTTTCAGGTGTGT GGGCCTGAATCGTTGCTCAGACC TGAAGAAGTTCGGTACACTAATGGGCCTGAATCGTTGCTCAGACCTGTATTTTCGACCAGGTGAGCAAACTTTCAGGTGTGTTAGTGCCGGCTGGTCTACA 4 2 3' arm Bombyx_mori mirbase mir-87 0.0003 ame-mir-87-1 0.00002 -40.9 .((...(((.(((..((((((((.(((((((...((((((..(((((..........)))))))))))...))))))).))))))))))))))..)).... (-40.90)