mature_miRNA miRNA* pre-miRNA EST_contig mismatches bulges arm species source_database RFAM_best_hit RFAM_lowest_evalue miRBase_best_hit miRBase_lowest_evalue folding_energy secondary_structure GAAGCTCGTCTCTACAGGTATCT CTACCCTGTAGATCCGGGCTTTTG GGCACATTCGTGATCTACCCTGTAGATCCGGGCTTTTGTAGATTAATTACATCAGAAGCTCGTCTCTACAGGTATCTCACGGCTGGAA 4 1 3' arm Bombyx_mori mirbase 100 tca-mir-993 3e-28 -36.34 ....((..(((((..((((.((((((..((((((((((..............))))))))))..))))))))))..)))))..))... (-36.34)