mature_miRNA miRNA* pre-miRNA EST_contig mismatches bulges arm species source_database RFAM_best_hit RFAM_lowest_evalue miRBase_best_hit miRBase_lowest_evalue folding_energy secondary_structure TCATCATCATCATCATCTATT TAGGTTATGAAGTATGTGGATG AGTACGCTAGTAGGTTATGAAGTATGTGGATGTATTTGAATGAGAAAAAGTTAACATATGTATGCATATCATCATCATCATCATCATCATCATCATCTATTGCAATAG GTGAACCACTCCTACAGAACGAACAAAGTTAAAAGTTCAAGTGTTGCAAGGTAATGGTCGCGAAGAGCTTTTGAAGATAATGGACTATTCATCCCTACCCCATTTCTGTAAAAGATCAGGGTCAGGGTCAAGTTCAGGATCATGGTCAGGGTCTGGGTCTGGGTCTGACACATCAGACTGTTACTCATTAGACCATCCATTTCATCAAGAACTTTACACCTACATGAAGCAACAATCAGGGATTAATGAACCGTTAGAACCCGCAAAACAAGGGTCGGTCCATGTGGAAGTGCCATTGGGTGAAGAGGCGGAAATACACAAAACTTTGGAATCCGAATTGAAGAAGCTTCGAAACCAGAAAAGTCTCTCGGGGTCCTTTCAGAATTTCAAGATTGGCAATTAAGGTCCCTCGGTTGTAGTGTTTGGTGTGGTTTAGTACGCTAGTAGGTTATGAAGTATGTGGATGTATTTGAATGAGAAAAAGTTAACATATGTATGCATATCATCATCATCATCATCATCATCATCATCTATTGCAATAGAGATGGCTTGTTATATGTCGCANA 5 1 3' arm Cichorium_intybus mirnest 100 100 -18.9 .....((.(((((((.((((...(((..((((....(((((((......((..((....))..))...))))..))).))))..)))..)))).)))))))))..... (-18.9)