mature_miRNA miRNA* pre-miRNA EST_contig mismatches bulges arm species source_database RFAM_best_hit RFAM_lowest_evalue miRBase_best_hit miRBase_lowest_evalue folding_energy secondary_structure GCGGCTCCGGCTGCAGTTGCA GGGCTGGGGCTGGGGCCGGGG GCCGGAGCCGAGGCTGCTGCTGGGGCTGGGGCTGGGGCCGGGGCCGGGGCTGGAGCTCGACGACGACGACGACGCCGTGGCGACGAAGAAGGTGGACGACGACGACGACGCGGCCGCGGCGGCGCGGGAGCACAACCTTCACGCGCAGCGGCTCCGGCTGCAGTTGCACCAGCCGAGCCAGACGGCC ACCAAGAAGCTCAGCTCACCGTCTGCAAACCCGTTGGGAGCTACCATGAGCGGCACGACCGGCGGCGTCGTGGGTGTGCAGACGACGGCGGCGGCGGTTCCTGATCTCTCACTCCACATAAGCCCTCCGTCGCCGCCACCGGCCGGCGGCGTCGAGGCGCTGCCGGAGCCGAGGCTGCTGCTGGGGCTGGGGCTGGGGCCGGGGCCGGGGCTGGAGCTCGACGACGACGACGACGCCGTGGCGACGAAGAAGGTGGACGACGACGACGACGCGGCCGCGGCGGCGCGGGAGCACAACCTTCACGCGCAGCGGCTCCGGCTGCAGTTGCACCAGCCGAGCCAGACGGCCCACGGGTTCAAGAAGAGCTCCGTCGGGCACCGCTGCCCGGCGGCGGGAGGAGAAGCTCCAGGGCGCCGCGGATGAGGTGGACCACCGCGCTGCACGCGCACTTC 3 0 3' arm Zea_mays mirnest 100 100 -80.2 ((((..((...(((((.(((...(((((.(((((((((((..((((.((((...(((((.((.((.((....((((.((....)).....))))..)).)).)).))).)))))).)))).(((((((((......)))).)))))..))))))))))).)))))))).)))))..))....)))). (-80.2)