mature_miRNA miRNA* pre-miRNA EST_contig mismatches bulges arm species source_database RFAM_best_hit RFAM_lowest_evalue miRBase_best_hit miRBase_lowest_evalue folding_energy secondary_structure GGAATGTTGTCTGGTTCAAGG TCGGACCAGGTTTCTTCCCC TGCTTCTGAGTGGAATGTTGTCTGGTTCAAGGTCTTTTGCTTTGTGATCCATCTGTGTAGAGCTTCTTAGTATCCTTGGATCTGCAGATCTCGGACCAGGTTTCTTCCCCTCCAAAAT AAAAGAAATAGAGATGAGCTAGAGGGGGCCGGGGCCGGGAGAGCCAAGGGCCCGAGGGAGATGGAGAAAGATGTGAAGCTATTTGCTTCTGAGTGGAATGTTGTCTGGTTCAAGGTCTTTTGCTTTGTGATCCATCTGTGTAGAGCTTCTTAGTATCCTTGGATCTGCAGATCTCGGACCAGGTTTCTTCCCCTCCAAAATACCTCCAAAATGAATTCCGGGAAGTTTGGGAAAGCTTCCCCCCCGGGGAGAATTTTGGCCCAAGTTTTTTTTTAAAAGATTTGGTGAGGGGTCCCAAAATCCCCCGGCCCGCTTTATAAAAATTGGGGGGGGGGGAAACCCCCAGTCTCCCCCCCCGGGGTTTTATAAACCACCCCCGGGGTTTTTTTTTTTTTTTTTTTTGGCCGCGCCGCGGGCCCCCAAAAAAAAAAACCCCCCAATGGGGGGGGTGGGGGGGGGTTTTTTCCCCCCCCCT 5 1 5' arm Zea_mays mirnest mir-166 4e-38 zma-MIR166d 8e-36 -30 .......(((.((((.....((((((((.(((((...(((.....((((((.......(((...))).........)))))).)))))))).))))))))....)))).)))...... (-30)