mature_miRNA miRNA* pre-miRNA EST_contig mismatches bulges arm species source_database RFAM_best_hit RFAM_lowest_evalue miRBase_best_hit miRBase_lowest_evalue folding_energy secondary_structure AGGTGGGCATACTGCCAATGG TTGGCATTCTGTCCACCTCC GCCATGTGCGCTTATCAAAGGGTGGCGCTTACTGAGAGTTCCTTGGCATTCTGTCCACCTCCCTTCTTGACGATCTTGCAGAAAGTTTGCTTTTTTTGTTTGTTTGGAGGTGGGCATACTGCCAATGGAGCTGCGTAGGCCTCCCTTTGTAAAGCCCGCATGACATA CAGAAGTAGCACCTCCACTAGTAGATCTATAGGCATGGGGAGAGAGAAACAGGTAGATCTGCTTGAAGCCATCGTCTCATATCGAATCCTTCAGATCTCACACACGGAGACCAAGAAAAGCACAATTCCCATCCATCTGATCTGCATGCCCATCCCTCATCCCTCTCCCCCCTCCATGGAATCCCACAAAAGCCGCAACCCTAGCTCCACTCCCTCTATAAATAGCGCGCCCCGTAAAGCAGCACATACATTACAGTGCAGCAAGAGCCGCAGCAGCTGTGGTCTGTGAGTGGATCGCTCGGAGCAAGCAAAGGAACTAGTAGTGGCGGCCATGTGCGCTTATCAAAGGGTGGCGCTTACTGAGAGTTCCTTGGCATTCTGTCCACCTCCCTTCTTGACGATCTTGCAGAAAGTTTGCTTTTTTTGTTTGTTTGGAGGTGGGCATACTGCCAATGGAGCTGCGTAGGCCTCCCTTTGTAAAGCCCGCATGACATAAGTAAGAGCTACGTTAGATTTGATCATCACCTGTGCCGGAAACGCCTTCGTTTTGCTGCCTTTTCTTGCGTGTGTTCATTTGATGGGCCTGTTTGTTTGATTGATGTCGATCGAGGCGTGCCCGGACGGCCGGTTCTAGCTTGTTTTCTTAGGCTCTTAG 3 1 3' arm Zea_mays mirnest MIR394 4e-45 zma-MIR394b 2e-52 -67.3 ..((((((.((((..(((((((.((.((((((.(..((((((((((((...(((((((((((......(((((....(((((...))))).....))))).....)))))))))))...)))))).)))))).))))))))))))))))..)))).))))))..... (-67.3)