mature_miRNA miRNA* pre-miRNA EST_contig mismatches bulges arm species source_database RFAM_best_hit RFAM_lowest_evalue miRBase_best_hit miRBase_lowest_evalue folding_energy secondary_structure AGGTGGGCATACTGCCAATGG TTGGCATTCTGTCCACCTCC GCTTATCAAAGGGGCGCTTACTGAAGAGTTCCTTGGCATTCTGTCCACCTCCTCTCGCCGATCTTGCAGAAAGTTTACCAGTTCTGTTGCATTTTTTKTTTTGGAGGTGGGCATACTGCCAATGGAGCTGTGCAGGCCTCCCTTTGTAAAGCCC AGCGGCTGTGGCCTGTGGGTTCGTGGGCAAGCAAGCAGTAGTAGTMATGCGTGCTTATCAAAGGGGCGCTTACTGAAGAGTTCCTTGGCATTCTGTCCACCTCCTCTCGCCGATCTTGCAGAAAGTTTACCAGTTCTGTTGCATTTTTTKTTTTGGAGGTGGGCATACTGCCAATGGAGCTGTGCAGGCCTCCCTTTGTAAAGCCCACATGACATAAATACGAGCTATACGTTGGATTTGATCATCGCCTGTGTCAGAAACGCCTTCAATTAAGCTTTGTTTGCTGCCTTTTCTTGCGTGTCCAATTTGATGGGCCTTTTGGTGTCGATCGAGGTGCCCCGGCCGATTCTTCTTGTTTTCTTTGCTGGGGTTAAGGTTCATCMATGGTCAATGGCCCGTGATATGCTTTGGGGGCAAAGTTTTGGGGGAAAGCTTTTTTAGGC 3 1 3' arm Zea_mays mirnest MIR394 9e-40 zma-MIR394a 5e-44 -56.9 ((((..((((((((.(((...((...((((((((((((...(((((((((((............(((((..((.(.....)..)).)))))...........)))))))))))...)))))).))))))...))))).))))))))..)))).. (-56.9)