mature_miRNA miRNA* pre-miRNA EST_contig mismatches bulges arm species source_database RFAM_best_hit RFAM_lowest_evalue miRBase_best_hit miRBase_lowest_evalue folding_energy secondary_structure CACTTGGGGTTGGGGATGGCC CCCCCCCCGCCCTGCTGCA CAACAGGCGTGCACTTGGGGTTGGGGATGGCCCTGAAGTGGACGACGCTGTTGCCGGTCAGCCTGCGGCGGCCTCTGCAGACAGGAAGGCCGGAGGACGCGTCGCTGCCGCCCCCCCCGCCCTGCTGCAACGGCGCG GGCGGGAATGCCAAATATACGACTCATTCCAAACAACATTGTTCACAGACTTATTACACGCATCATGCAAAGATAAGCGGAACAAGCCTCCGCTGTCATAGCCTTTTCCAACAAACGTTCCATACTTAGACAGTATACATTTATTAAACTCAAAGACAATTTTGTAGCCCTCTCGACACAATTGAGAGCCACTAACTAAATTCTTTTTGAGGGAGGGGACATGCTGCACGTTCTTCAATAGCACCGTCTTTCCCGAAGTAAACTTCAGAATGACTGTACCAACACCAAGAACACGCGCATGGGATCCGTTCCCCATCAGCAAGGCTCTAGTCCCTTTGCACTGAACCTATCCCAGCAGCTTCAACCGAAGCGCAACAACATCACCGCACTCTGCAAGCCGGGACAACAGGCGTGCACTTGGGGTTGGGGATGGCCCTGAAGTGGACGACGCTGTTGCCGGTCAGCCTGCGGCGGCCTCTGCAGACAGGAAGGCCGGAGGACGCGTCGCTGCCGCCCCCCCCGCCCTGCTGCAACGGCGCGAGGGTCTCGACGACGTCGCTCATGAGCGGCCTGGCCTTGGGGTTCTGGCTCAGGCAGTAAAACGCGAGGCTGCAGGACTTGTGAGCGGCTCTGGCCGAATACTGCCCCTCCAGCCTCGGGTCGATGATCTGGAGGAGCCTCCTCTTGTCGT 4 2 5' arm Zea_mays mirnest 100 100 -57.9 ......((.((((..((((((.((((..(((......((((.((((((.(((.((((((..((((..((((...))))...))))..))))))..))))))))))))).))).)))).)))))).))))...))... (-57.9)