mature_miRNA miRNA* pre-miRNA EST_contig mismatches bulges arm species source_database RFAM_best_hit RFAM_lowest_evalue miRBase_best_hit miRBase_lowest_evalue folding_energy secondary_structure TGAGAATCTTGATGATGCTGCAT GCAGCACCACCAAGATTCACATC AAGCAAACATCGACAGTGGGTGCTTGCAGGTGCAGCACCACCAAGATTCACATCCAACTCTCACGCATCTTCAGTGATGCATGCATGCTCTGTGATGTCTCGCAGCAGCTATATGCATATGTGATGAGATGAGAATCTTGATGATGCTGCATCAGCAGACACTCACTCATCACACCAACG GCTCAGCTAGCTAGCTCACTCCTCTCTTGAGTCGTGGTGTCCATCACAATCTTCTCTATATCGATACAGGTGAGGAGGTAGCTAGACAGATCAACACCAATCCTCTCAACGACATCCCCTTGTTCTTGTAGAGAGAGTTGGTGTAGGTCGAAAGGCAGATAGATCATATATAGAGGGAGAGATGCATATATGGTGTAGGGTTCTTCAATTTGTTTCTATGATCGATTCATTCGCCCTGCAGCCCCCCCTGCGCATCTAGTTATGTCTCCATCCCTCCTCCCTTGTTCCTGATACATATATATATATGTAGGTAGTGGCTCTGTATATACCCATGCCATCTCTCTCAATCTCATCTATATCATATATACCCATGCTTTGCATCTAGCTGTTTCATTTCTTTTCACTCGTGCTTTGAAAGATCTGGTACAGTCCGGCCTGTATTAGTAAGAACGAGTTAGAAAAATACACACGTACGCGCGAGAACCATGCATCATCAGCTAGCTCCTCTCTTTCCTCTTTTTTTTTGTTAATGCATACATTCATATATATATTCCCATGAATGAATGCTTTAAGCATGAGGCAAGCAAACATCGACAGTGGGTGCTTGCAGGTGCAGCACCACCAAGATTCACATCCAACTCTCACGCATCTTCAGTGATGCATGCATGCTCTGTGATGTCTCGCAGCAGCTATATGCATATGTGATGAGATGAGAATCTTGATGATGCTGCATCAGCAGACACTCACTCATCACACCAACGTACCCCAACAAGGGTGAGAGACGACGAATCGGCTGCTGGTATATACATACAACTGAGAAGTCGGGATACCTTTGCTGATTATTAACTTGTTTCCATTGCTGTGAAATGAAACTTTCAATGCAAGGGGGCTG 3 0 3' arm Zea_mays mirnest mir-172 9e-25 zma-MIR172c 2e-65 -65.9 ...........((.((((((((.((((.(((((((((.((.((((((((.((((...........((((..((...(((((((...(((((((((....)))))).)))..))))))).)).)))).)))).)))))))).)).))))))))).)))).))))))))..))......... (-65.9)