mature_miRNA miRNA* pre-miRNA EST_contig mismatches bulges arm species source_database RFAM_best_hit RFAM_lowest_evalue miRBase_best_hit miRBase_lowest_evalue folding_energy secondary_structure TTTCATGTCGATTTCATTTCATG TAATTAGCGGAGCACGGCATCGCC CGGCCATGTCGTAATTAGCGGAGCACGGCATCGCCGGCGATAATTAATGACGGTGGTCACGTTGGTTTCATGTCGATTTCATTTCATGACACGGCCG 8 5 3' arm Drosophila_melanogaster mirbase mir-288 6e-49 dse-mir-288 2e-45 -33.12 (((((.((((((........(((..((((((.(((((((........((((....)))))))))))...))))))..))).....)))))).))))) (-33.12)