mature_miRNA miRNA* pre-miRNA EST_contig mismatches bulges arm species source_database RFAM_best_hit RFAM_lowest_evalue miRBase_best_hit miRBase_lowest_evalue folding_energy secondary_structure CAGATAAAGATGAGAGAGAGA TTTCTCTCTTCTTTATCTGTG GGTGCAGACTGCAGATAAAGATGAGAGAGAGAGAGAGGAGAGAAATTTCCTCTCTCTTTCTCTCTACCCACCGACTCTCTCGTCGCTTCGTCTTTTTTTTTCTCTCTTCTTTATCTGTGGGTGGCAT TCATATTCAATTTCCGCCGCAACTATAAAAAGGAGAGTCCTGCTTCAACCCTAGAACATTTCTTTCTTCATCTTCAATTCCATAACCATAAGGATAGCTTGGTGCAGACTGCAGATAAAGATGAGAGAGAGAGAGAGGAGAGAAATTTCCTCTCTCTTTCTCTCTACCCACCGACTCTCTCGTCGCTTCGTCTTTTTTTTTCTCTCTTCTTTATCTGTGGGTGGCATTTTTCTTCGATAAATGGCCCCCTCATCACTCTGTTAAGATCCGCGGCAAGGAAGGGATTCCACCAAGCCAGCAGAGGTTCCTCTTTACTGGCAAACAACTTGACGATGGTCGCACGCTTGCAGACTACAATATCAAGTAGTGAACCTTTCATTTGGTCCTCCGTCTCAAGGGTGGCATGCAGATTTTTGTGAAAACCCTAACCGGCAAAACATAAACTTGGAGATCGATAGCTCTGACACAATCGACAATGTCAAGGCTAAGATCCAGGATAAAGGAGCGGATTCCGCCGGACCAGCAGAGTCATTATTATTTTTTTTTTTTTGAAGAGCTTTGAAGTTTCTTTTGGCTTTAACCGAGGTTTGACCTTGAGAATGAATCTGTATCTGGACGGTATAAGAATGTATCTGTATCTGGACGGTATAAGAATGTATAAGATTGTATCTGGACGGTTTCAGTGAAATTATATAATACCCTTCATTATGTGGTCAA 1 0 5' arm Citrus_reticulata mirnest 100 100 -47.2 .((((...(((((((((((((.(((((((((((((((((((((((...........)))))))).((....((((......))))....))))))))))))))))).)))))))))))))...)))) (-47.2)