mature_miRNA miRNA* pre-miRNA EST_contig mismatches bulges arm species source_database RFAM_best_hit RFAM_lowest_evalue miRBase_best_hit miRBase_lowest_evalue folding_energy secondary_structure TCTCCGTCCCAAAATATAGTT TTATATTTTAGGACCGAGGGA AAAACATACTATCTCCGTCCCAAAATATAGTTCTTTCTAGCCTATTTTTTTCCGATCCATATTAATAAACGTATAAATAGTGTAGAATGAATTATATTTTAGGACCGAGGGAGTAGGTCT TGTTGGAATAAATCCGGTTTGCATGAAGTTGTCTTAGGTACAACTGGTAGGAAACAAGGAACCTCATCAAAGGCAGCGCACTTACCCTCCACCGAGTCACGGCTCTGCAAGAGAAGACTACTAGAAGCATTTGTGTCCCTTGAGCATCCTTTGGTGGGGCAACTAAAATGCGAGGAGCTATCTTACCGGGCACTTAAGGATACGGCTCATGAATACCATCACGCGCTTGAGCTCCTCAGGAAGGCCCCATTTTTTGGCTGCTGGCGAGCTAAGCCTACATTTGTTGATTCGTTTGCAGTTTCACGGTGATGTCTCGTGAACTGGTGAATGCCATCTCCCTGTTTCTTTTTGTCTGTTGAAAAAACATACTATCTCCGTCCCAAAATATAGTTCTTTCTAGCCTATTTTTTTCCGATCCATATTAATAAACGTATAAATAGTGTAGAATGAATTATATTTTAGGACCGAGGGAGTAGGTCTGATCCAGCTTTGTTCTGTGTGAAATTGTATATGTTGGTGGTCCATGAATGAATCAAACTGAACTTATGCGCGCAAAAAAAAAAAAAAAA 2 0 5' arm Zea_mays mirnest MIR1122 0.000002 osa-MIR1439 0.00009 -30.8 ...((.((((.((((.((((.((((((((((((.(((((..((((((.....((...............))...))))))..))))).)))))))))))).)))).)))).)))).)).. (-30.8)