mature_miRNA miRNA* pre-miRNA EST_contig mismatches bulges arm species source_database RFAM_best_hit RFAM_lowest_evalue miRBase_best_hit miRBase_lowest_evalue folding_energy secondary_structure GGTTTCATAACGCAGAGAATC TTCTCTGCGGGCTGGAACCAG CTGTAGGAAATTTTTTGGGGTACTTCTGGTTTCATAACGCAGAGAATCATCAGCGTGAAGGAATGATTCTCTGCGGGCTGGAACCAGAAGTCCTGCAAATGTTCTTTTA 3 0 5' arm Drosophila_melanogaster mirbase 100 dme-mir-4963 3e-57 -49 ....(((((....((((.((.(((((((((((((...(((((((((((((...(......).)))))))))))))...))))))))))))).)).))))..)))))... (-49.00)