mature_miRNA miRNA* pre-miRNA EST_contig mismatches bulges arm species source_database RFAM_best_hit RFAM_lowest_evalue miRBase_best_hit miRBase_lowest_evalue folding_energy secondary_structure TGATTGAGCCGTGCCAATATC TGTTGGCTCGGCTCACTCAGA AAGAAATGGAAGTGTAACTATGGTGTTGGCTCGGCTCACTCAGAAGTTGAAGCCGAATCCAAATGGTAGCTGCCGGCGTTTCTGATTGAGCCGTGCCAATATCTCAGTACTCTTTCATGCTGA ATTCCAACACTACACACCCACCTAGCCTGGCAACCAGCCGCCGACCTCCTATCTACCATGGATATGTGCCTTGGAGCCAAAAGATCCATCACCAATCTTTTCCCTCTTCTATACCTCCTCATGCCGCGGCATGGATCTCCTTGTTCGTTTGTCATCTAGGAGTATCTGGCTAGGTCGCCGGCCGGAGGAGGAGGAGGAGAAAGAAATGGAAGTGTAACTATGGTGTTGGCTCGGCTCACTCAGAAGTTGAAGCCGAATCCAAATGGTAGCTGCCGGCGTTTCTGATTGAGCCGTGCCAATATCTCAGTACTCTTTCATGCTGATCTCGCGTCACACGTCGATCTCTTCCTGAAGTGCTGTAGTCTCTCTCGTACTCTCATGCATCTTGGTCATGTGTTCTTATACTGTCTCTTTTGCTTCTGCTGCCTGCCAGTATGTGGACTG 2 0 3' arm Zea_mays mirnest MIR171_1 5e-53 zma-MIR171d 2e-64 -47.4 .((..(((((((.(((.((..(((((((((.(((((((.(((((((.....((((...((....)).......)))).))))))).))))))).)))))))))..))))).))))))).)).. (-47.4)