mature_miRNA miRNA* pre-miRNA EST_contig mismatches bulges arm species source_database RFAM_best_hit RFAM_lowest_evalue miRBase_best_hit miRBase_lowest_evalue folding_energy secondary_structure TGCCTGGCTCCCTGTATGCCA GCGTGCGAGGTGCCAAGCATG GCTAGGGAATATGCCTGGCTCCCTGTATGCCACTCGCACGGCTACCACACCCCCGGTGGCCGCTGCGGCTGGCGTGCGAGGTGCCAAGCATGGCCCCCTC CAAACCACACGCTATCTAATGCATCCTTCCTTCCTAGCTAGCTAGTCTCCGTTTTCCTTCGTCTCTCCCTGCCTCGCCGTACGTCTAGCTAGTTCTAGCTCTTCAGATGATCTTGTTGGTGTGCTGCTTTGCCCGTTCGTGGCCGTACATGCATGACATATATATATTGCAAGCCGAAGCAATGGCCGCGGCGGCGGTGGCGGCAGGCGAGGAAGAGGTGAAAGAAAGCTAGCTAGGGAATATGCCTGGCTCCCTGTATGCCACTCGCACGGCTACCACACCCCCGGTGGCCGCTGCGGCTGGCGTGCGAGGTGCCAAGCATGGCCCCCTCATACATCTCTCTCATTTCTCATTGTTTCAGACTCAAGCTAACTACATACTCGCCATTTTTCTTACATTTCATTCGTCACATGCAGAACCATATTGATTTCTGTACTCCTTTCCATCAGATTATAGTTGTAGAGATACTTGAGTCCCTGTCGATCAGTCAGGCTTTTTCGTTCAGTCGGATCTCCGCATAGTCGGATCTCCTACACGGGGAGCGCCATGGCCGGCCGCGGCGGGACTGCTGCTTCCTTTGGACGGAGCAGCAGCGCCGTGTCGATGATTCACTACTGAAAGA 3 0 5' arm Zea_mays mirnest mir-160 8e-42 zma-MIR160e 3e-44 -55.6 ....(((..(((((.((((.((.(((((((((.(((((((((((((........)))))))).))))).))))))))).)).)))).))))).))).... (-55.6)