mature_miRNA miRNA* pre-miRNA EST_contig mismatches bulges arm species source_database RFAM_best_hit RFAM_lowest_evalue miRBase_best_hit miRBase_lowest_evalue folding_energy secondary_structure TAAAGCTAGATTACCAAAGCAT GCTTTGGCGCTTTAGCTGTATG CTGCTCTGCTTCTGCTTTGGCGCTTTAGCTGTATGATAGATTTAAAATACTTCATAAAGCTAGATTACCAAAGCATTGGCTCTG 5 0 3' arm Drosophila_pseudoobscura mirbase mir-9 6e-24 dpe-mir-79 2e-38 -27.4 .......(((..((((((((...(((((((.(((((...((.....))...))))).)))))))...))))))))..))).... (-27.40)