mature_miRNA miRNA* pre-miRNA EST_contig mismatches bulges arm species source_database RFAM_best_hit RFAM_lowest_evalue miRBase_best_hit miRBase_lowest_evalue folding_energy secondary_structure GCACTGGGTGAAGTTTGTCTTA CGATAAACTTTGTTCAGTTTTG ATTATACGATAAACTTTGTTCAGTTTTGCCAACTTGCTTGCAGCACTGGGTGAAGTTTGTCTTATAAT 4 0 3' arm Drosophila_pseudoobscura mirbase mir-3 7e-32 dpe-mir-309 4e-33 -25.5 ((((((.(((((((((..((((((.((((..........)))).))))))..))))))))).)))))) (-25.50)